STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT45527.1RNA polymerase sigma-70 factor, ECF subfamily. (188 aa)    
Predicted Functional Partners:
SFT64000.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SFT85637.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SFT40523.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.773
SFT45549.1
Hypothetical protein.
       0.773
SFT54683.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.773
SFT53467.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.766
SFT63199.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.760
SFT37746.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.757
SFT76617.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.754
SFT90889.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.728
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.