STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT52176.1Hypothetical protein. (192 aa)    
Predicted Functional Partners:
SFT51498.1
Protein of unknown function.
 
 
 0.962
SFT73763.1
Protein of unknown function.
 
 
 0.962
SFT49912.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.788
SFT73930.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.788
SFT87820.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.788
SFT87830.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.788
SFT88455.1
PAS domain S-box-containing protein.
  
    0.788
SFT87807.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.786
SFT56465.1
ABC-type multidrug transport system, ATPase component.
  
     0.769
SFT52163.1
Uncharacterized membrane protein.
       0.613
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.