STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT53341.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
SFT56140.1
Hypothetical protein.
  
     0.768
SFT49537.1
Protein of unknown function.
  
     0.746
SFT67489.1
Hypothetical protein.
  
     0.727
SFT90118.1
Gliding motility-associated protein GldM.
 
   
 0.718
SFT76409.1
Hypothetical protein.
  
     0.694
menA
1,4-dihydroxy-2-naphthoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
       0.693
SFT53363.1
O-succinylbenzoate synthase.
       0.693
SFT85449.1
Gliding motility-associated lipoprotein GldH; Manually curated.
  
     0.657
priA
Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.654
SFT65847.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.641
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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