STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT53440.1Type IX secretion system membrane protein, PorP/SprF family. (318 aa)    
Predicted Functional Partners:
SFT53455.1
Type IX secretion system membrane protein, PorP/SprF family.
 
    
0.840
SFT38846.1
Hypothetical protein.
  
 
   0.799
SFT53467.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.785
SFT90823.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.774
SFT65267.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.772
SFT79358.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.772
SFT51998.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.771
SFT74332.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.771
SFT84278.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.770
SFT91597.1
Type IX secretion system membrane protein, PorP/SprF family; Partial gene; manually curated.
  
     0.770
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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