STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT54749.1Protein of unknown function. (262 aa)    
Predicted Functional Partners:
SFT54762.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.948
SFT54736.1
Hypothetical protein.
 
     0.820
SFT67839.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.613
SFT54722.1
Two component transcriptional regulator, LuxR family.
       0.601
SFT62515.1
Hypothetical protein.
  
     0.550
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.539
SFT91589.1
Arginase family enzyme; Belongs to the arginase family.
  
     0.470
SFT54790.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.466
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.460
SFT82144.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.447
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.