Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFT37152.1 | SFT56636.1 | SAMN05216474_0168 | SAMN05216474_1363 | Superfamily II DNA or RNA helicase. | RNA polymerase Rpb6. | 0.993 |
SFT37152.1 | rplF | SAMN05216474_0168 | SAMN05216474_1948 | Superfamily II DNA or RNA helicase. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.673 |
SFT37152.1 | rpoA | SAMN05216474_0168 | SAMN05216474_1959 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
SFT37152.1 | rpoB | SAMN05216474_0168 | SAMN05216474_2869 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.992 |
SFT37152.1 | rpoC | SAMN05216474_0168 | SAMN05216474_2868 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.902 |
SFT56636.1 | SFT37152.1 | SAMN05216474_1363 | SAMN05216474_0168 | RNA polymerase Rpb6. | Superfamily II DNA or RNA helicase. | 0.993 |
SFT56636.1 | nusA | SAMN05216474_1363 | SAMN05216474_1669 | RNA polymerase Rpb6. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.973 |
SFT56636.1 | rplF | SAMN05216474_1363 | SAMN05216474_1948 | RNA polymerase Rpb6. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.981 |
SFT56636.1 | rplJ | SAMN05216474_1363 | SAMN05216474_2871 | RNA polymerase Rpb6. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.956 |
SFT56636.1 | rpmC | SAMN05216474_1363 | SAMN05216474_1941 | RNA polymerase Rpb6. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.958 |
SFT56636.1 | rpoA | SAMN05216474_1363 | SAMN05216474_1959 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SFT56636.1 | rpoB | SAMN05216474_1363 | SAMN05216474_2869 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SFT56636.1 | rpoC | SAMN05216474_1363 | SAMN05216474_2868 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SFT56636.1 | rpsB | SAMN05216474_1363 | SAMN05216474_3046 | RNA polymerase Rpb6. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.967 |
SFT56636.1 | rpsL | SAMN05216474_1363 | SAMN05216474_1929 | RNA polymerase Rpb6. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.953 |
nusA | SFT56636.1 | SAMN05216474_1669 | SAMN05216474_1363 | NusA antitermination factor; Participates in both transcription termination and antitermination. | RNA polymerase Rpb6. | 0.973 |
nusA | rplF | SAMN05216474_1669 | SAMN05216474_1948 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.962 |
nusA | rplJ | SAMN05216474_1669 | SAMN05216474_2871 | NusA antitermination factor; Participates in both transcription termination and antitermination. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.970 |
nusA | rpmC | SAMN05216474_1669 | SAMN05216474_1941 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.952 |
nusA | rpoA | SAMN05216474_1669 | SAMN05216474_1959 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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