SFT64860.1 protein (Lishizhenia tianjinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFT64860.1

Por secretion system C-terminal sorting domain-containing protein. (548 aa)

Predicted Functional Partners:

SFT64875.1

0.773

SFT34910.1

0.704

SFT86342.1

0.681

SFT70119.1

0.667

SFT90604.1

0.607

recA

0.568

SFT81904.1

0.561

SFT83965.1

0.555

recX

0.551

SFT64890.1

0.521

Your Current Organism:

Lishizhenia tianjinensis

NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFT34910.1	SFT64860.1	SAMN05216474_0030	SAMN05216474_1540	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.704
SFT34910.1	SFT70119.1	SAMN05216474_0030	SAMN05216474_1905	Gliding motility-associated C-terminal domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.484
SFT64860.1	SFT34910.1	SAMN05216474_1540	SAMN05216474_0030	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.704
SFT64860.1	SFT64875.1	SAMN05216474_1540	SAMN05216474_1541	Por secretion system C-terminal sorting domain-containing protein.	Redoxin.	0.773
SFT64860.1	SFT64890.1	SAMN05216474_1540	SAMN05216474_1542	Por secretion system C-terminal sorting domain-containing protein.	Uridine kinase.	0.521
SFT64860.1	SFT70119.1	SAMN05216474_1540	SAMN05216474_1905	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.667
SFT64860.1	SFT81904.1	SAMN05216474_1540	SAMN05216474_2529	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.561
SFT64860.1	SFT83965.1	SAMN05216474_1540	SAMN05216474_2607	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.555
SFT64860.1	SFT86342.1	SAMN05216474_1540	SAMN05216474_2825	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.681
SFT64860.1	SFT90604.1	SAMN05216474_1540	SAMN05216474_3071	Por secretion system C-terminal sorting domain-containing protein.	Short chain amide porin.	0.607
SFT64860.1	recA	SAMN05216474_1540	SAMN05216474_2780	Por secretion system C-terminal sorting domain-containing protein.	Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.568
SFT64860.1	recX	SAMN05216474_1540	SAMN05216474_1784	Por secretion system C-terminal sorting domain-containing protein.	Regulatory protein; Modulates RecA activity; Belongs to the RecX family.	0.551
SFT64875.1	SFT64860.1	SAMN05216474_1541	SAMN05216474_1540	Redoxin.	Por secretion system C-terminal sorting domain-containing protein.	0.773
SFT64875.1	SFT64890.1	SAMN05216474_1541	SAMN05216474_1542	Redoxin.	Uridine kinase.	0.521
SFT64890.1	SFT64860.1	SAMN05216474_1542	SAMN05216474_1540	Uridine kinase.	Por secretion system C-terminal sorting domain-containing protein.	0.521
SFT64890.1	SFT64875.1	SAMN05216474_1542	SAMN05216474_1541	Uridine kinase.	Redoxin.	0.521
SFT70119.1	SFT34910.1	SAMN05216474_1905	SAMN05216474_0030	Gliding motility-associated C-terminal domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.484
SFT70119.1	SFT64860.1	SAMN05216474_1905	SAMN05216474_1540	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.667
SFT70119.1	SFT81904.1	SAMN05216474_1905	SAMN05216474_2529	Gliding motility-associated C-terminal domain-containing protein.	Hypothetical protein.	0.472
SFT81904.1	SFT64860.1	SAMN05216474_2529	SAMN05216474_1540	Hypothetical protein.	Por secretion system C-terminal sorting domain-containing protein.	0.561