STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT66419.1Lipopolysaccharide transport system permease protein. (274 aa)    
Predicted Functional Partners:
SFT66430.1
Lipopolysaccharide transport system ATP-binding protein.
 
 0.999
SFT66463.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.829
SFT66445.1
Hypothetical protein.
  
    0.791
SFT66511.1
Glycosyltransferase, GT2 family.
 
  
 0.776
SFT63118.1
Polysaccharide export outer membrane protein.
  
  
 0.707
SFT88294.1
Polysaccharide export outer membrane protein.
  
  
 0.707
SFT49616.1
Hypothetical protein.
 
  
 0.476
SFT66479.1
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase.
       0.468
SFT66545.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.428
SFT62961.1
Hypothetical protein.
  
  
 0.423
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.