STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT66870.1rfaE bifunctional protein, domain II; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. (175 aa)    
Predicted Functional Partners:
SFT45251.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase/D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase; Belongs to the gmhB family.
  
 0.994
SFT76442.1
rfaE bifunctional protein, domain I.
  
  0.989
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.
  
 0.985
hldD
ADP-glyceromanno-heptose 6-epimerase precursor; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
  
 
  0.976
SFT64790.1
Predicted amidohydrolase.
 
 
 
  0.855
SFT50441.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase).
 
      0.821
SFT86160.1
ADP-heptose:LPS heptosyltransferase.
  
 
 0.814
SFT85410.1
ADP-heptose:LPS heptosyltransferase.
 
 
 0.812
SFT51971.1
Heptosyltransferase-2.
  
 
 0.805
SFT66851.1
Hypothetical protein.
       0.797
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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