STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT68574.1CarboxypepD_reg-like domain-containing protein. (818 aa)    
Predicted Functional Partners:
SFT68562.1
Lipopolysaccharide export system ATP-binding protein.
       0.649
SFT68546.1
Hypothetical protein.
       0.623
SFT68741.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.586
SFT80262.1
Hypothetical protein.
  
     0.579
SFT67341.1
Protein TonB.
  
   0.576
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
       0.543
SFT54150.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.541
SFT87529.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.538
SFT69899.1
TonB family C-terminal domain-containing protein.
  
   0.532
SFT65881.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.523
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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