STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT73532.1Acetyltransferase (GNAT) family protein. (140 aa)    
Predicted Functional Partners:
SFT73521.1
Uncharacterized membrane protein YjfL, UPF0719 family.
       0.773
SFT73481.1
Hypothetical protein.
       0.752
SFT73490.1
Hypothetical protein.
       0.752
SFT73500.1
Protein of unknown function.
       0.752
SFT73512.1
Hypothetical protein.
       0.752
speE
Spermidine synthase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the spermidine/spermine synthase family.
    
  0.732
SFT73462.1
Agmatinase; Belongs to the arginase family.
    
  0.578
SFT73451.1
Hypothetical protein.
       0.514
SFT50700.1
Hypothetical protein.
  
     0.484
SFT52645.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.484
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.