SFT79312.1 protein (Lishizhenia tianjinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFT79312.1

Por secretion system C-terminal sorting domain-containing protein. (1152 aa)

Predicted Functional Partners:

SFT85386.1

0.614

SFT43943.1

0.583

SFT48564.1

0.580

SFT37016.1

0.567

SFT68888.1

0.542

SFT76376.1

0.535

SFT84254.1

0.518

SFT34910.1

0.517

SFT44925.1

0.517

SFT70119.1

0.513

Your Current Organism:

Lishizhenia tianjinensis

NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFT34910.1	SFT37016.1	SAMN05216474_0030	SAMN05216474_0160	Gliding motility-associated C-terminal domain-containing protein.	Conserved repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.	0.565
SFT34910.1	SFT43943.1	SAMN05216474_0030	SAMN05216474_0576	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.670
SFT34910.1	SFT70119.1	SAMN05216474_0030	SAMN05216474_1905	Gliding motility-associated C-terminal domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.484
SFT34910.1	SFT79312.1	SAMN05216474_0030	SAMN05216474_2356	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.517
SFT37016.1	SFT34910.1	SAMN05216474_0160	SAMN05216474_0030	Conserved repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.565
SFT37016.1	SFT68888.1	SAMN05216474_0160	SAMN05216474_1822	Conserved repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.482
SFT37016.1	SFT70119.1	SAMN05216474_0160	SAMN05216474_1905	Conserved repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.547
SFT37016.1	SFT79312.1	SAMN05216474_0160	SAMN05216474_2356	Conserved repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.567
SFT37016.1	SFT85386.1	SAMN05216474_0160	SAMN05216474_2717	Conserved repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.409
SFT43943.1	SFT34910.1	SAMN05216474_0576	SAMN05216474_0030	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.670
SFT43943.1	SFT44925.1	SAMN05216474_0576	SAMN05216474_0629	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.429
SFT43943.1	SFT68888.1	SAMN05216474_0576	SAMN05216474_1822	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.455
SFT43943.1	SFT70119.1	SAMN05216474_0576	SAMN05216474_1905	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.692
SFT43943.1	SFT79312.1	SAMN05216474_0576	SAMN05216474_2356	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.583
SFT44925.1	SFT43943.1	SAMN05216474_0629	SAMN05216474_0576	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.429
SFT44925.1	SFT48564.1	SAMN05216474_0629	SAMN05216474_0827	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.701
SFT44925.1	SFT76376.1	SAMN05216474_0629	SAMN05216474_2251	Por secretion system C-terminal sorting domain-containing protein.	Peptidase family C25.	0.447
SFT44925.1	SFT79312.1	SAMN05216474_0629	SAMN05216474_2356	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.517
SFT44925.1	SFT84254.1	SAMN05216474_0629	SAMN05216474_2629	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.432
SFT48564.1	SFT44925.1	SAMN05216474_0827	SAMN05216474_0629	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.701