STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT80026.1SCO1/SenC. (230 aa)    
Predicted Functional Partners:
SFT81983.1
Cytochrome c oxidase subunit 2.
 
 
 0.876
SFT80001.1
Putative membrane protein.
 
    0.834
SFT80015.1
Protein SCO1/2.
 
     0.807
SFT80046.1
Caa(3)-type oxidase, subunit IV.
       0.721
SFT40775.1
Thioredoxin.
   
   0.703
SFT66256.1
AhpC/TSA family protein.
   
   0.703
SFT85556.1
Thioredoxin.
   
   0.703
SFT80097.1
Cytochrome c oxidase subunit 3.
 
  
 0.672
SFT80106.1
Cytochrome c oxidase subunit 3.
 
  
 0.646
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
  
 0.611
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.