STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT82242.1Surface antigen. (361 aa)    
Predicted Functional Partners:
SFT82275.1
Hypothetical protein.
  
 
 0.877
SFT56653.1
Beta-barrel assembly machine subunit BamD.
 
 
 0.849
SFT82254.1
Exodeoxyribonuclease-3.
       0.651
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.601
SFT82230.1
Hypothetical protein.
       0.550
SFT74258.1
Peptidyl-prolyl cis-trans isomerase SurA.
   
 
 0.481
SFT66392.1
Site-2 protease. Metallo peptidase. MEROPS family M50B.
  
  
 0.467
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.462
SFT82266.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
       0.437
SFT73805.1
Periplasmic chaperone for outer membrane proteins Skp.
  
    0.429
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.