STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT87807.1Serine phosphatase RsbU, regulator of sigma subunit. (676 aa)    
Predicted Functional Partners:
SFT46730.1
PAS domain S-box-containing protein.
  
 0.933
SFT89044.1
Signal transduction histidine kinase.
  
 0.933
SFT42924.1
GAF sensor signal transduction histidine kinase.
 
 0.791
SFT51484.1
Hypothetical protein.
  
    0.787
SFT51498.1
Protein of unknown function.
  
    0.787
SFT73763.1
Protein of unknown function.
  
    0.787
SFT52176.1
Hypothetical protein.
  
    0.786
SFT84426.1
Serine/threonine-protein kinase RsbW.
 
 0.754
SFT49138.1
Stage II sporulation protein AA (anti-sigma F factor antagonist).
 
 0.720
SFT74146.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 0.714
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
Server load: low (16%) [HD]