STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT87937.1Peptidase family M23. (568 aa)    
Predicted Functional Partners:
SFT79384.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.716
SFT45864.1
Protein of unknown function.
  
     0.553
SFT85507.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.549
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.540
SFT46212.1
Hypothetical protein.
  
     0.524
SFT86230.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.523
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.496
SFT55072.1
Hypothetical protein.
  
     0.460
SFT38792.1
DoxX protein.
  
     0.406
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.