STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT90698.1TspO and MBR related proteins. (155 aa)    
Predicted Functional Partners:
SFT90691.1
Hypothetical protein.
       0.658
SFT90711.1
Methyltransferase domain-containing protein.
       0.634
SFT90722.1
Hypothetical protein.
       0.634
SFT80417.1
Lycopene cyclase domain-containing protein.
      0.604
SFT90679.1
Catechol 2,3-dioxygenase.
  
    0.521
SFT90729.1
Hypothetical protein.
       0.471
SFT90739.1
Hypothetical protein.
       0.471
SFT41814.1
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome).
 
  
 0.432
SFT90668.1
Protein of unknown function.
       0.404
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.