CCR75_009308 protein (Bremia lactucae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCR75_009308

HORMA domain-containing protein. (216 aa)

Predicted Functional Partners:

CCR75_000141

0.999

CCR75_009267

0.999

CCR75_003841

0.993

CCR75_009612

0.992

CCR75_002015

0.984

CCR75_006981

0.984

CCR75_001196

0.984

CCR75_003790

0.981

CCR75_003819

0.975

CCR75_004912

0.970

Your Current Organism:

Bremia lactucae

NCBI taxonomy Id: 4779
Other names: B. lactucae, Bremia lactucae Regel, lettuce downy mildew

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCR75_000141	CCR75_001196	A0A484E1G2	A0A484E8I8	DNA polymerase.	DNA_pol_E_B domain-containing protein.	0.995
CCR75_000141	CCR75_002015	A0A484E1G2	A0A484DUX9	DNA polymerase.	Uncharacterized protein.	0.995
CCR75_000141	CCR75_003790	A0A484E1G2	A0A484EFP3	DNA polymerase.	CBFD_NFYB_HMF domain-containing protein.	0.994
CCR75_000141	CCR75_003819	A0A484E1G2	A0A484DZ33	DNA polymerase.	Uncharacterized protein.	0.991
CCR75_000141	CCR75_003841	A0A484E1G2	A0A484EGT0	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.999
CCR75_000141	CCR75_004912	A0A484E1G2	A0A484E3B3	DNA polymerase.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.934
CCR75_000141	CCR75_006981	A0A484E1G2	A0A484E388	DNA polymerase.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.994
CCR75_000141	CCR75_009267	A0A484E1G2	A0A484EDH4	DNA polymerase.	Uncharacterized protein.	0.999
CCR75_000141	CCR75_009308	A0A484E1G2	A0A484DR67	DNA polymerase.	HORMA domain-containing protein.	0.999
CCR75_000141	CCR75_009612	A0A484E1G2	A0A484E1H1	DNA polymerase.	Uncharacterized protein.	0.993
CCR75_001196	CCR75_000141	A0A484E8I8	A0A484E1G2	DNA_pol_E_B domain-containing protein.	DNA polymerase.	0.995
CCR75_001196	CCR75_002015	A0A484E8I8	A0A484DUX9	DNA_pol_E_B domain-containing protein.	Uncharacterized protein.	0.996
CCR75_001196	CCR75_003790	A0A484E8I8	A0A484EFP3	DNA_pol_E_B domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.992
CCR75_001196	CCR75_003819	A0A484E8I8	A0A484DZ33	DNA_pol_E_B domain-containing protein.	Uncharacterized protein.	0.999
CCR75_001196	CCR75_003841	A0A484E8I8	A0A484EGT0	DNA_pol_E_B domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.998
CCR75_001196	CCR75_004912	A0A484E8I8	A0A484E3B3	DNA_pol_E_B domain-containing protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.485
CCR75_001196	CCR75_006981	A0A484E8I8	A0A484E388	DNA_pol_E_B domain-containing protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.999
CCR75_001196	CCR75_009267	A0A484E8I8	A0A484EDH4	DNA_pol_E_B domain-containing protein.	Uncharacterized protein.	0.995
CCR75_001196	CCR75_009308	A0A484E8I8	A0A484DR67	DNA_pol_E_B domain-containing protein.	HORMA domain-containing protein.	0.984
CCR75_001196	CCR75_009612	A0A484E8I8	A0A484E1H1	DNA_pol_E_B domain-containing protein.	Uncharacterized protein.	0.982