STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCR75_004947RRM domain-containing protein. (546 aa)    
Predicted Functional Partners:
CCR75_008666
SF3b1 domain-containing protein.
    
 
 0.927
CCR75_004838
Matrin-type domain-containing protein.
   
 
 0.805
CCR75_004281
CPSF_A domain-containing protein.
    
 
 0.751
CCR75_006927
C2H2-type domain-containing protein.
  
 
 
 0.745
CCR75_007990
PSP domain-containing protein.
   
 
 0.744
CCR75_009397
Sm domain-containing protein.
   
   0.724
CCR75_004072
Uncharacterized protein.
    
 
 0.703
CCR75_005842
SAP domain-containing protein.
    
 
 0.657
CCR75_007526
Uncharacterized protein.
   
   0.654
CCR75_007519
Uncharacterized protein.
   
   0.654
Your Current Organism:
Bremia lactucae
NCBI taxonomy Id: 4779
Other names: B. lactucae, Bremia lactucae Regel, lettuce downy mildew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.