CCR75_000779 protein (Bremia lactucae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCR75_000779

AMP-binding domain-containing protein. (308 aa)

Predicted Functional Partners:

CCR75_002139

0.928

CCR75_005300

0.928

CCR75_000960

0.925

CCR75_007707

0.925

CCR75_002362

0.925

CCR75_008577

0.925

CCR75_005192

0.919

CCR75_006498

0.910

CCR75_007650

0.909

CCR75_007214

0.871

Your Current Organism:

Bremia lactucae

NCBI taxonomy Id: 4779
Other names: B. lactucae, Bremia lactucae Regel, lettuce downy mildew

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCR75_000779	CCR75_000960	A0A484EBX1	A0A484E216	AMP-binding domain-containing protein.	L51_S25_CI-B8 domain-containing protein.	0.925
CCR75_000779	CCR75_002139	A0A484EBX1	A0A484DQQ3	AMP-binding domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.928
CCR75_000779	CCR75_002362	A0A484EBX1	A0A484E7J2	AMP-binding domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.925
CCR75_000779	CCR75_005192	A0A484EBX1	A0A484DVD6	AMP-binding domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.919
CCR75_000779	CCR75_005300	A0A484EBX1	A0A484E966	AMP-binding domain-containing protein.	Uncharacterized protein.	0.928
CCR75_000779	CCR75_006498	A0A484EBX1	A0A484EC00	AMP-binding domain-containing protein.	Uncharacterized protein.	0.910
CCR75_000779	CCR75_007214	A0A484EBX1	A0A484DSM2	AMP-binding domain-containing protein.	Nuclear pore protein.	0.871
CCR75_000779	CCR75_007650	A0A484EBX1	A0A484EHW5	AMP-binding domain-containing protein.	Uncharacterized protein.	0.909
CCR75_000779	CCR75_007707	A0A484EBX1	A0A484E3V3	AMP-binding domain-containing protein.	Uncharacterized protein.	0.925
CCR75_000779	CCR75_008577	A0A484EBX1	A0A484EHX2	AMP-binding domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.925
CCR75_000960	CCR75_000779	A0A484E216	A0A484EBX1	L51_S25_CI-B8 domain-containing protein.	AMP-binding domain-containing protein.	0.925
CCR75_000960	CCR75_002139	A0A484E216	A0A484DQQ3	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.987
CCR75_000960	CCR75_002362	A0A484E216	A0A484E7J2	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.987
CCR75_000960	CCR75_005192	A0A484E216	A0A484DVD6	L51_S25_CI-B8 domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.954
CCR75_000960	CCR75_005300	A0A484E216	A0A484E966	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.980
CCR75_000960	CCR75_006498	A0A484E216	A0A484EC00	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.982
CCR75_000960	CCR75_007650	A0A484E216	A0A484EHW5	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.980
CCR75_000960	CCR75_007707	A0A484E216	A0A484E3V3	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.983
CCR75_000960	CCR75_008577	A0A484E216	A0A484EHX2	L51_S25_CI-B8 domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.981
CCR75_002139	CCR75_000779	A0A484DQQ3	A0A484EBX1	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	AMP-binding domain-containing protein.	0.928