CCR75_004560 protein (Bremia lactucae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCR75_004560

PHD-type domain-containing protein. (626 aa)

Predicted Functional Partners:

CCR75_008041

0.992

CCR75_002205

0.991

CCR75_002814

0.989

CCR75_000653

0.941

CCR75_006391

0.941

CCR75_004327

0.936

CCR75_000654

0.925

CCR75_002881

0.918

CCR75_000067

0.910

CCR75_008028

0.907

Your Current Organism:

Bremia lactucae

NCBI taxonomy Id: 4779
Other names: B. lactucae, Bremia lactucae Regel, lettuce downy mildew

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCR75_000067	CCR75_000653	A0A484DXH3	A0A484E7Q7	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.917
CCR75_000067	CCR75_000654	A0A484DXH3	A0A484EA03	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.977
CCR75_000067	CCR75_002814	A0A484DXH3	A0A484E3D0	Uncharacterized protein.	Uncharacterized protein.	0.467
CCR75_000067	CCR75_004560	A0A484DXH3	A0A484ECT3	Uncharacterized protein.	PHD-type domain-containing protein.	0.910
CCR75_000067	CCR75_006391	A0A484DXH3	A0A484EEU5	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.917
CCR75_000067	CCR75_008028	A0A484DXH3	A0A484E8I3	Uncharacterized protein.	Uncharacterized protein.	0.699
CCR75_000067	CCR75_008041	A0A484DXH3	A0A484EI44	Uncharacterized protein.	Uncharacterized protein.	0.588
CCR75_000653	CCR75_000067	A0A484E7Q7	A0A484DXH3	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.917
CCR75_000653	CCR75_000654	A0A484E7Q7	A0A484EA03	Histone H3; Belongs to the histone H3 family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.989
CCR75_000653	CCR75_002205	A0A484E7Q7	A0A484E5R3	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.601
CCR75_000653	CCR75_002814	A0A484E7Q7	A0A484E3D0	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.948
CCR75_000653	CCR75_004327	A0A484E7Q7	A0A484E1Q6	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.893
CCR75_000653	CCR75_004560	A0A484E7Q7	A0A484ECT3	Histone H3; Belongs to the histone H3 family.	PHD-type domain-containing protein.	0.941
CCR75_000653	CCR75_008028	A0A484E7Q7	A0A484E8I3	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.844
CCR75_000653	CCR75_008041	A0A484E7Q7	A0A484EI44	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.851
CCR75_000654	CCR75_000067	A0A484EA03	A0A484DXH3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.977
CCR75_000654	CCR75_000653	A0A484EA03	A0A484E7Q7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H3; Belongs to the histone H3 family.	0.989
CCR75_000654	CCR75_002205	A0A484EA03	A0A484E5R3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.518
CCR75_000654	CCR75_002814	A0A484EA03	A0A484E3D0	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.883
CCR75_000654	CCR75_004327	A0A484EA03	A0A484E1Q6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.954