CCR75_005500 protein (Bremia lactucae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCR75_005500

Uncharacterized protein. (706 aa)

Predicted Functional Partners:

CCR75_002327

0.749

CCR75_004303

0.545

CCR75_006794

0.505

CCR75_000987

0.504

CCR75_004165

0.501

CCR75_009395

0.498

CCR75_002468

0.497

CCR75_006534

0.497

CCR75_006570

0.497

CCR75_002849

0.497

Your Current Organism:

Bremia lactucae

NCBI taxonomy Id: 4779
Other names: B. lactucae, Bremia lactucae Regel, lettuce downy mildew

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCR75_000987	CCR75_002468	A0A484EB43	A0A484DQ35	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
CCR75_000987	CCR75_004165	A0A484EB43	A0A484E0Z2	Uncharacterized protein.	Uncharacterized protein.	0.734
CCR75_000987	CCR75_004303	A0A484EB43	A0A484EBX7	Uncharacterized protein.	DIX domain-containing protein.	0.867
CCR75_000987	CCR75_005500	A0A484EB43	A0A484EE97	Uncharacterized protein.	Uncharacterized protein.	0.504
CCR75_000987	CCR75_006534	A0A484EB43	A0A484DTT0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
CCR75_000987	CCR75_006794	A0A484EB43	A0A484DZV7	Uncharacterized protein.	Uncharacterized protein.	0.411
CCR75_002327	CCR75_002468	A0A484EFS9	A0A484DQ35	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.664
CCR75_002327	CCR75_004303	A0A484EFS9	A0A484EBX7	Uncharacterized protein.	DIX domain-containing protein.	0.870
CCR75_002327	CCR75_005500	A0A484EFS9	A0A484EE97	Uncharacterized protein.	Uncharacterized protein.	0.749
CCR75_002327	CCR75_006534	A0A484EFS9	A0A484DTT0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.664
CCR75_002327	CCR75_006570	A0A484EFS9	A0A484DWX1	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.777
CCR75_002327	CCR75_009395	A0A484EFS9	A0A484EGW0	Uncharacterized protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.705
CCR75_002468	CCR75_000987	A0A484DQ35	A0A484EB43	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.532
CCR75_002468	CCR75_002327	A0A484DQ35	A0A484EFS9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.664
CCR75_002468	CCR75_002849	A0A484DQ35	A0A484DZZ2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.404
CCR75_002468	CCR75_004165	A0A484DQ35	A0A484E0Z2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.413
CCR75_002468	CCR75_004303	A0A484DQ35	A0A484EBX7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DIX domain-containing protein.	0.427
CCR75_002468	CCR75_005500	A0A484DQ35	A0A484EE97	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.497
CCR75_002468	CCR75_006570	A0A484DQ35	A0A484DWX1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.420
CCR75_002849	CCR75_002468	A0A484DZZ2	A0A484DQ35	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.404