STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_0023Hypothetical protein; KEGG: bsu:BG10610 spore coat polysaccharide biosynthesis protein spsB. (511 aa)    
Predicted Functional Partners:
Daud_0021
PFAM: acylneuraminate cytidylyltransferase; KEGG: mag:amb0088 CMP-N-acetylneuraminic acid synthetase.
       0.693
Daud_0022
PFAM: oxidoreductase domain protein; KEGG: vvu:VV10802 predicted dehydrogenase.
       0.690
Daud_0020
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mbu:Mbur_1591 polysaccharide biosynthesis protein CapD.
       0.689
Daud_0024
Hypothetical protein; KEGG: bsu:BG10610 spore coat polysaccharide biosynthesis protein spsB.
     
0.687
Daud_0025
PFAM: oxidoreductase domain protein; KEGG: vvu:VV10801 predicted dehydrogenase.
       0.686
Daud_0027
KEGG: mbu:Mbur_1588 transferase hexapeptide repeat.
       0.677
Daud_0026
Hypothetical protein; KEGG: bsu:BG10610 spore coat polysaccharide biosynthesis protein spsB.
      
0.675
Daud_0019
PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: mta:Moth_0756 N-acylneuraminate-9-phosphate synthase.
  
  
 0.563
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein.
  
    0.545
Daud_0018
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mbu:Mbur_1587 UDP-N-acetylglucosamine 2-epimerase.
     
 0.515
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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