STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_0139ATPase; KEGG: mta:Moth_1296 ATPase. (384 aa)    
Predicted Functional Partners:
Daud_1014
KEGG: mta:Moth_1529 hypothetical protein.
  
     0.681
Daud_2049
PFAM: putative stage IV sporulation YqfD; KEGG: mta:Moth_0592 putative stage IV sporulation YqfD.
  
     0.660
Daud_1386
KEGG: mta:Moth_1761 hypothetical protein.
  
     0.571
Daud_1427
Peptidase U4, sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.545
Daud_0078
KEGG: swo:Swol_0086 hypothetical protein.
  
     0.514
Daud_0446
Hypothetical protein; KEGG: mta:Moth_1580 accessory gene regulator B.
  
     0.505
Daud_1163
KEGG: mta:Moth_1937 carbohydrate binding family 25.
  
    0.478
Daud_1367
KEGG: swo:Swol_0931 hypothetical protein.
  
     0.475
Daud_0140
KEGG: mta:Moth_1299 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase.
       0.458
Daud_2090
PFAM: protein of unknown function DUF421; KEGG: chy:CHY_2581 hypothetical protein.
  
     0.441
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.