STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_0689Putative circadian clock protein, KaiC; PFAM: KaiC domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0885 hypothetical protein. (467 aa)    
Predicted Functional Partners:
Daud_0690
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain).
 
     0.917
Daud_0688
KEGG: chy:CHY_0884 hypothetical protein.
       0.804
Daud_0696
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE1051 hypothetical protein.
 
     0.764
Daud_1910
KEGG: tte:TTE1962 hypothetical protein.
  
     0.735
Daud_0889
PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase.
  
     0.712
Daud_1582
PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase.
  
     0.712
Daud_1730
PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase.
  
     0.712
Daud_0692
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tte:TTE1047 STAS domain.
 
     0.701
Daud_0762
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_0219 IS605 family transposase.
  
     0.700
Daud_0784
PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase.
  
     0.699
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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