STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_0819Recombinase; PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bsu:BG10458 site-specific DNA recombinase. required for the chromosomal rearrangement that creates the sigK gene by excision of the skin element between spoIVCB and spoIIIC genes (stage IV sporulation). (540 aa)    
Predicted Functional Partners:
Daud_0820
Mg chelatase, subunit ChlI; KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase.
       0.783
Daud_0817
PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein.
 
    0.513
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
     
 0.488
Daud_0821
KEGG: mta:Moth_0522 hypothetical protein.
       0.479
Daud_0822
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; KEGG: mta:Moth_0521 diguanylate cyclase (GGDEF domain).
       0.479
Daud_0815
PFAM: TRAG family protein; KEGG: tte:TTE2042 ATPase involved in conjugal plasmid transfer.
 
    0.472
Daud_1278
Metallophosphoesterase; PFAM: SMC domain protein; metallophosphoesterase; KEGG: chy:CHY_0945 Ser/Thr protein phosphatase family protein.
  
  
 0.414
Daud_0812
Hypothetical protein; KEGG: ava:Ava_B0057 HNH endonuclease.
 
    0.402
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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