STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_0951KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (372 aa)    
Predicted Functional Partners:
Daud_0952
PFAM: type II secretion system protein; KEGG: rxy:Rxyl_1164 type II secretion system protein.
  
 0.925
Daud_0953
TIGRFAM: type IV pilus assembly protein PilM; KEGG: rxy:Rxyl_1465 type IV pilus assembly protein PilM.
 
   
 0.871
Daud_0970
PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein.
  
 0.813
Daud_0992
PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein.
  
 0.813
Daud_0967
PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: mta:Moth_1550 peptidase A24A-like.
 
   
 0.790
Daud_0975
TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA; KEGG: chy:CHY_0639 type IV pilus assembly protein PilM.
 
   
 0.686
Daud_0998
TIGRFAM: type IV pilus assembly protein PilM; KEGG: chy:CHY_0639 type IV pilus assembly protein PilM.
 
   
 0.686
Daud_0956
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: mta:Moth_1554 type II secretion system protein E.
 
  
0.660
Daud_0957
KEGG: rxy:Rxyl_1158 Tfp pilus assembly protein PilE.
 
   
 0.627
Daud_0955
Hypothetical protein; KEGG: rxy:Rxyl_1463 Tfp pilus assembly protein PilO-like protein.
  
  
 0.585
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.