STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1197PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1355 nucleoside recognition. (178 aa)    
Predicted Functional Partners:
Daud_1198
PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1356 nucleoside recognition.
  
 0.999
Daud_1196
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mta:Moth_1352 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.
       0.754
Daud_0635
PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_0938 nucleoside recognition.
  
  
 0.577
Daud_1284
KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.
   
  
 0.571
Daud_1227
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: dsy:DSY2305 hypothetical protein.
  
  
 0.567
Daud_1199
KEGG: chy:CHY_1943 hypothetical protein.
       0.556
Daud_1200
KEGG: gka:GK2789 hypothetical protein.
       0.525
Daud_1008
Transcriptional regulator, Fis family; TIGRFAM: helix-turn-helix, Fis-type; KEGG: sth:STH1861 stage III sporulation protein AB.
   
  
 0.515
Daud_1203
PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase, DHHA1; KEGG: swo:Swol_1420 polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.512
Daud_1007
SMART: AAA ATPase; KEGG: sth:STH1862 stage III sporulation protein AA.
   
  
 0.507
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.