STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1260KEGG: pai:PAE0088 hypothetical protein. (415 aa)    
Predicted Functional Partners:
Daud_1259
SMART: AAA ATPase; KEGG: pai:PAE0090 hypothetical protein.
 
    0.953
Daud_1258
PFAM: leucine rich repeat variant; KEGG: dra:DR0535 hypothetical protein.
       0.765
Daud_1257
Contains unknown domain; PFAM: response regulator receiver; KEGG: dsy:DSY4758 hypothetical protein.
       0.486
Daud_1256
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bha:BH0601 hypothetical protein.
 
     0.445
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.