STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1309PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: mta:Moth_0118 (2R)-phospho-3-sulfolactate synthase, ComA. (262 aa)    
Predicted Functional Partners:
Daud_1308
PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13112 similar to multidrug resistance protein.
 
     0.868
Daud_1310
PFAM: protein of unknown function DUF441; KEGG: mta:Moth_0120 protein of unknown function DUF441.
 
     0.858
Daud_1307
KEGG: mta:Moth_0117 hypothetical protein.
 
     0.850
Daud_1648
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: mta:Moth_2180 hydrogenase accessory protein HypB.
  
    0.750
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
    0.652
Daud_0711
PFAM: NERD domain protein; KEGG: tte:TTE0673 hypothetical protein.
   
    0.652
Daud_0134
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA2963 iron-sulfur cluster binding protein.
   
    0.528
Daud_0369
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0098 formate dehydrogenase, beta subunit.
   
    0.528
Daud_1043
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2600 formate dehydrogenase beta subunit.
   
    0.528
Daud_1579
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2600 formate dehydrogenase beta subunit.
   
    0.528
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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