STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1494KEGG: plt:Plut_0695 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Daud_1492
KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase, central domain protein; cell division protein 48, CDC48, domain 2; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family.
 
  
 0.904
Daud_1495
KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
     0.893
Daud_1490
PFAM: Gas vesicle G; KEGG: sco:SCO6502 gas vesicle synthesis protein.
 
     0.869
Daud_1491
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: aba:Acid345_2401 gas vesicle synthesis GvpLGvpF.
 
    0.869
Daud_1486
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mba:Mbar_A0338 GvpL.
 
    0.818
Daud_1489
PFAM: gas vesicle protein GVPa; KEGG: mba:Mbar_A0335 hypothetical protein.
 
     0.807
Daud_1493
Hypothetical protein.
       0.773
Daud_1487
PFAM: Gas vesicle K; KEGG: mba:Mbar_A0337 hypothetical protein.
 
    0.771
gvpA
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
     0.759
gvpA-2
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
     0.745
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.