STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1610KEGG: tte:TTE2200 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Daud_1609
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: swo:Swol_1401 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.923
Daud_1608
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: chy:CHY_1972 2-oxoglutarate ferredoxin oxidoreductase.
 
    0.911
Daud_1607
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: swo:Swol_1399 putative keto/oxoacid ferredoxin oxidoreductase, beta subunit.
 
     0.892
Daud_1606
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 pyruvate ferredoxin/flavodoxin oxidoreductase family protein.
 
     0.886
Daud_1611
KEGG: chy:CHY_1974 hypothetical protein.
       0.782
Daud_1612
PFAM: glycosyl transferase, family 2; KEGG: chy:CHY_1975 glycosyltransferase, group 2 family.
       0.782
Daud_2229
TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain; Belongs to the ParB family.
  
 
 0.776
Daud_1613
KEGG: swo:Swol_0592 hypothetical protein.
       0.758
Daud_1614
PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein.
       0.748
Daud_1605
TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: bha:BH1469 hypothetical protein.
  
    0.603
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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