STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1663PFAM: lipopolysaccharide biosynthesis; KEGG: swo:Swol_1712 capsular polysaccharide biosynthesis protein-like protein. (445 aa)    
Predicted Functional Partners:
Daud_1662
KEGG: gka:GK3326 capsular polysaccharide biosynthesis protein.
 
 0.997
Daud_1703
PFAM: sugar transferase; KEGG: spt:SPA0789 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.927
Daud_1719
PFAM: PHP C-terminal domain protein; KEGG: btk:BT9727_4957 phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis).
 
 
 0.917
Daud_1664
PFAM: O-antigen polymerase; KEGG: swo:Swol_0127 hypothetical protein.
 
     0.863
Daud_2076
KEGG: chy:CHY_0042 hypothetical protein.
 
 
 0.629
Daud_0091
Conserved hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.624
Daud_0020
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mbu:Mbur_1591 polysaccharide biosynthesis protein CapD.
 
  
 0.499
vapC-4
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.449
Daud_1661
KEGG: lpn:lpg1661 hypothetical protein.
       0.416
Daud_0863
Mannose-1-phosphate guanylyltransferase (GDP), Phosphomannomutase; PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pca:Pcar_1792 phosphomannomutase.
  
  
 0.406
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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