STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1798KEGG: cya:CYA_0874 putative CRISPR-associated RAMP protein. (339 aa)    
Predicted Functional Partners:
Daud_1805
Hypothetical protein; KEGG: cya:CYA_0882 CRISPR-associated protein, Crm2 family.
 
 
 0.985
Daud_1800
PFAM: protein of unknown function DUF324; KEGG: cya:CYA_0876 CRISPR-associated RAMP protein.
 
    0.959
Daud_1803
KEGG: cyb:CYB_0593 CRISPR-associated RAMP protein, Csx10 family.
 
    0.958
Daud_1804
PFAM: protein of unknown function DUF324; KEGG: cyb:CYB_0594 CRISPR-associated RAMP protein, SSO1426 family.
 
     0.954
Daud_1801
TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324; KEGG: cya:CYA_0877 CRISPR-associated RAMP protein, SSO1426 family.
 
     0.946
Daud_1799
Hypothetical protein.
       0.773
Daud_1802
Hypothetical protein.
       0.773
Daud_1806
KEGG: vch:VC1899 hypothetical protein.
       0.761
Daud_1797
Hypothetical protein.
       0.718
Daud_1823
TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: ttj:TTHB160 hypothetical protein.
  
 
 0.718
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.