STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1908Histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: sru:SRU_1122 FixL-related histidine kinase. (772 aa)    
Predicted Functional Partners:
Daud_0377
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: sus:Acid_4616 response regulator receiver modulated diguanylate cyclase.
 
 
 0.989
Daud_1419
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_2047 DNA-binding response regulator.
 
 0.989
Daud_1846
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: sus:Acid_4616 response regulator receiver modulated diguanylate cyclase.
 
 0.989
Daud_1897
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mta:Moth_0827 two component transcriptional regulator, winged helix family.
 
 
 0.988
Daud_0292
ABC-type sugar transport system periplasmic component-like protein; KEGG: gka:GK3226 ribose ABC transporter (ribose-binding protein).
  
 
 0.985
Daud_1728
Putative PAS/PAC sensor protein; KEGG: tth:TTC0629 HD-hydrolase domain; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region.
 
 
 0.975
Daud_1738
PFAM: response regulator receiver; KEGG: chy:CHY_1018 chemotaxis response regulator.
 
 
 0.972
Daud_1723
PFAM: response regulator receiver; KEGG: tte:TTE1101 CheY-like receiver domains.
 
 
 0.969
Daud_0138
Diguanylate cyclase with PAS/PAC sensor; KEGG: swo:Swol_0011 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region.
  
 
 0.959
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: chy:CHY_0992 flagellar hook-basal body complex protein FliE.
  
 
 0.958
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.