STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_1941KEGG: chy:CHY_1544 [Ni/Fe] hydrogenase, b-type cytochrome subunit. (186 aa)    
Predicted Functional Partners:
Daud_0134
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA2963 iron-sulfur cluster binding protein.
  
 0.973
Daud_0369
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0098 formate dehydrogenase, beta subunit.
  
 0.973
Daud_1043
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2600 formate dehydrogenase beta subunit.
  
 0.973
Daud_1579
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2600 formate dehydrogenase beta subunit.
  
 0.973
Daud_0104
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: chy:CHY_0733 NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.953
Daud_1580
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sth:STH2601 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.949
Daud_1581
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH2602 putative formate dehydrogenase subunit.
  
 0.949
Daud_1104
PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: mta:Moth_1467 formylmethanofuran dehydrogenase, subunit E region.
    
  0.902
Daud_0567
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0932 putative dehydrogenase, beta subunit.
     
  0.900
Daud_1563
PFAM: phosphoenolpyruvate carboxykinase (ATP); KEGG: ape:APE0033 phosphoenolpyruvate carboxykinase (ATP); Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
     
 0.803
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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