STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_2002PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: chy:CHY_2035 CBS/cyclic nucleotide-binding domain protein. (641 aa)    
Predicted Functional Partners:
Daud_2003
DNA polymerase III, epsilon subunit; KEGG: aeh:Mlg_2053 putative PAS/PAC sensor protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease.
   
 0.952
Daud_1570
PFAM: Na+/solute symporter; KEGG: rha:RHA1_ro05043 sodium:solute symporter, SSF; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.740
Daud_1567
KEGG: chy:CHY_2036 putative DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease.
    0.728
Daud_0272
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gka:GK0928 sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.722
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.610
Daud_2001
Hypothetical protein; KEGG: aeh:Mlg_2003 Na+/solute symporter.
  
    0.536
Daud_1203
PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase, DHHA1; KEGG: swo:Swol_1420 polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
  
 0.434
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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