STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daud_2087PFAM: PRC-barrel domain protein; KEGG: chy:CHY_2053 PRC-barrel domain protein. (83 aa)    
Predicted Functional Partners:
Daud_1222
PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC.
  
    0.773
Daud_1009
PFAM: Stage III sporulation AC family protein; KEGG: chy:CHY_2005 putative sporulation protein.
  
     0.772
Daud_1424
KEGG: mta:Moth_0854 hypothetical protein.
 
     0.769
Daud_0635
PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_0938 nucleoside recognition.
  
     0.768
Daud_0829
PFAM: peptidase S14, ClpP; KEGG: sth:STH1558 ATP-dependent clp protease proteolytic subunit.
 
     0.768
Daud_1221
PFAM: Stage V sporulation AD family protein; KEGG: mta:Moth_1375 stage V sporulation AD.
  
    0.767
Daud_1010
KEGG: chy:CHY_2004 putative sporulation protein.
  
     0.762
Daud_1426
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.762
Daud_0897
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.758
Daud_1220
PFAM: SpoVA protein; KEGG: mta:Moth_1374 SpoVA protein.
  
     0.756
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.