STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1A9D1RING-type domain-containing protein. (384 aa)    
Predicted Functional Partners:
A0A0P1B741
Ubiquitin thioesterase otub1.
    
 0.728
A0A0P1AWP7
Ubiquitin carboxyl-terminal hydrolase.
    
 0.645
A0A0P1AB81
Ubiquitin-40s ribosomal protein s27a.
    
  0.625
A0A0N7L3V9
Ubiquitin-60s ribosomal protein l40.
    
  0.578
A0A0P1AMW4
Ubiquitin-60s ribosomal protein l40.
    
  0.578
A0A0P1AVV5
Sporangia induced phosphatidyl inositol kinase (PIK-E1).
    
  0.549
A0A0N7L410
Ubiquitin domain.
    
  0.502
A0A0P1A8W4
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.502
A0A0P1A9X0
Ubiquitin-like protein nedd8.
    
  0.502
A0A0P1B7L5
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 
 0.431
Your Current Organism:
Plasmopara halstedii
NCBI taxonomy Id: 4781
Other names: P. halstedii, Peronospora halstedii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.