STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO89815.1FadR family transcriptional regulator. (277 aa)    
Predicted Functional Partners:
CDO89816.1
NAD dependent epimerase/dehydratase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.877
CDO89814.1
Caib/baif family protein; Belongs to the CoA-transferase III family.
 
    0.754
CDO85850.1
GntR family transcriptional regulator.
 
  
 0.753
CDO88961.1
GntR family transcriptional regulator.
 
  
 0.745
CDO89881.1
GntR family transcriptional regulator.
 
  
 0.744
CDO86165.1
GntR family transcriptional regulator.
 
  
 0.721
CDO86439.1
GntR family transcriptional regulator.
 
  
 0.694
CDO86120.1
GntR family transcriptional regulator.
 
  
 0.682
CDO87276.1
GntR family transcriptional regulator.
 
  
 0.679
CDO91584.1
Transcriptional regulator.
 
  
 0.679
Your Current Organism:
Mycobacterium triplex
NCBI taxonomy Id: 47839
Other names: ATCC 700071, CIP 106108, DSM 44626, JCM 14744, M. triplex
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