STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIR64943.1Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)    
Predicted Functional Partners:
KIR64942.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.917
KIR64945.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.725
KIR66729.1
Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.719
KIR64944.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.699
KIR64273.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.652
KIR63361.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.586
KIR64466.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.581
KIR64935.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
     
 0.581
xerC
Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
     
 0.581
KIR62665.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.581
Your Current Organism:
Micromonospora carbonacea
NCBI taxonomy Id: 47853
Other names: ATCC 27114, ATCC 27115, DSM 43168, DSM 43815, IFO 14107, IFO 14108, JCM 3139, M. carbonacea, Micromonospora carbonacea subsp. aurantiaca, Micromonospora carbonacea subsp. carbonacea, NBRC 14108, NRRL 2972
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