STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIR65446.1Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
KIR65448.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.901
KIR65447.1
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.896
KIR65449.1
Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.876
KIR62047.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.754
KIR62280.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.754
KIR63385.1
Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.609
KIR66914.1
Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.565
KIR61895.1
Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.563
KIR63296.1
Peptidase C60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.546
KIR63535.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.539
Your Current Organism:
Micromonospora carbonacea
NCBI taxonomy Id: 47853
Other names: ATCC 27114, ATCC 27115, DSM 43168, DSM 43815, IFO 14107, IFO 14108, JCM 3139, M. carbonacea, Micromonospora carbonacea subsp. aurantiaca, Micromonospora carbonacea subsp. carbonacea, NBRC 14108, NRRL 2972
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