STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIR66403.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)    
Predicted Functional Partners:
KIR66518.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.979
KIR66971.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.959
KIR66482.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.933
KIR66613.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
KIR60712.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.924
KIR65671.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.920
KIR63530.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.858
KIR65488.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.669
KIR65729.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.659
KIR66881.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.655
Your Current Organism:
Micromonospora carbonacea
NCBI taxonomy Id: 47853
Other names: ATCC 27114, ATCC 27115, DSM 43168, DSM 43815, IFO 14107, IFO 14108, JCM 3139, M. carbonacea, Micromonospora carbonacea subsp. aurantiaca, Micromonospora carbonacea subsp. carbonacea, NBRC 14108, NRRL 2972
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.