STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIR62051.1Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)    
Predicted Functional Partners:
KIR66512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.804
KIR65421.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.776
KIR66509.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.763
KIR66511.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.752
KIR63321.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.747
EfeB
Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.712
tatA
Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
 
     0.600
KIR62077.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
KIR63227.1
Integral membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.555
KIR63442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.517
Your Current Organism:
Micromonospora carbonacea
NCBI taxonomy Id: 47853
Other names: ATCC 27114, ATCC 27115, DSM 43168, DSM 43815, IFO 14107, IFO 14108, JCM 3139, M. carbonacea, Micromonospora carbonacea subsp. aurantiaca, Micromonospora carbonacea subsp. carbonacea, NBRC 14108, NRRL 2972
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