STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIR61050.1Activity regulator of membrane protease YbbK; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
KIR61051.1
Stomatin/prohibitin-family membrane protease subunit YbbK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
KIR64386.1
Band 7 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.805
cobS
Cobalamin biosynthesis protein CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.750
CobJ
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.661
KIR66552.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.628
KIR61049.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.608
KIR60585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.513
KIR61047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
KIR62117.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
cobQ
Cobalamin biosynthesis protein CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.426
Your Current Organism:
Micromonospora carbonacea
NCBI taxonomy Id: 47853
Other names: ATCC 27114, ATCC 27115, DSM 43168, DSM 43815, IFO 14107, IFO 14108, JCM 3139, M. carbonacea, Micromonospora carbonacea subsp. aurantiaca, Micromonospora carbonacea subsp. carbonacea, NBRC 14108, NRRL 2972
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