STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL45930.1F5/8 type C domain-containing protein. (717 aa)    
Predicted Functional Partners:
SCL57588.1
Endoglucanase.
  
 0.803
SCL49603.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
   
 0.683
SCL55561.1
Chitinase, GH18 family; Belongs to the glycosyl hydrolase 18 family.
 
    0.661
SCL62312.1
Hypothetical protein.
 
     0.654
SCL51986.1
Pectate lyase superfamily protein.
  
     0.650
SCL45935.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
    0.644
SCL50003.1
Carbohydrate binding module (family 35).
  
     0.550
SCL70225.1
Type 1 glutamine amidotransferase (GATase1).
 
     0.544
SCL60099.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
   
 0.533
SCL70138.1
Hexosaminidase.
  
  
  0.498
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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