STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46631.1phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (435 aa)    
Predicted Functional Partners:
SCL46635.1
acyl-CoA thioesterase.
 
 
 0.992
SCL63650.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 
 0.962
SCL63642.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 
 0.955
SCL63657.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 
 0.955
SCL63636.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
  
 0.954
SCL63632.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.937
SCL55621.1
Amino acid adenylation domain-containing protein.
     
 0.902
SCL55815.1
Amino acid adenylation domain-containing protein.
     
 0.902
SCL55626.1
Amino acid adenylation domain-containing protein.
     
 0.846
SCL55820.1
Amino acid adenylation domain-containing protein.
     
 0.846
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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