STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47440.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
SCL47443.1
Glycosyl transferase family 2.
   
 0.995
SCL47436.1
Methyltransferase domain-containing protein.
     0.985
SCL47449.1
Hypothetical protein.
 
   
 0.952
SCL47454.1
dTDP-L-rhamnose 4-epimerase.
 
   
 0.907
SCL47474.1
Sulfoxide reductase catalytic subunit YedY.
 
     0.898
SCL60212.1
5'-methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
 
   
 0.663
SCL47478.1
Hypothetical protein.
 
     0.650
SCL59230.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
     0.457
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.