STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47935.1Short-chain dehydrogenase. (260 aa)    
Predicted Functional Partners:
SCL55621.1
Amino acid adenylation domain-containing protein.
  
 0.910
SCL55815.1
Amino acid adenylation domain-containing protein.
  
 0.910
SCL47915.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
 
    0.866
SCL47939.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
  
0.861
SCL55626.1
Amino acid adenylation domain-containing protein.
  
 
 0.849
SCL55820.1
Amino acid adenylation domain-containing protein.
  
 
 0.849
SCL47921.1
Acyl dehydratase.
 
  
  0.843
SCL47926.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
  
0.836
SCL47932.1
NADPH2:quinone reductase.
 
     0.821
SCL47906.1
acyl-CoA dehydrogenase.
 
    0.816
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.