STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48878.1Serine phosphatase RsbU, regulator of sigma subunit. (395 aa)    
Predicted Functional Partners:
SCL63929.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.871
SCL51991.1
Signal transduction histidine kinase.
 
 
 0.841
SCL63342.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   0.800
SCL48882.1
DNA-binding transcriptional regulator, MarR family.
 
    0.795
SCL64010.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.795
SCL69538.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.749
SCL54653.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.742
SCL52885.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.737
SCL46430.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.732
SCL55651.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
     0.705
Your Current Organism:
Micromonospora chersina
NCBI taxonomy Id: 47854
Other names: ATCC 53710, DSM 44151, IFO 15963, JCM 9459, M. chersina, NBRC 15963, strain M956-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.